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  5. SymbC1.scaffold2654.4

SymbC1.scaffold2654.4 (2654.4)


Aliases : 2654.4

Description : DEAD/DEAH box helicase domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0003157 (OrthoFinder) Phylogenetic Tree(s): OG0003157_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2654.4
Cluster HCCA: Cluster_583

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000204.43 tig00000204_g17710.t1 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder
PTI_02G03520.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
XM_003056607.1 MicpuC2_55903, 55903 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 121 227
IPR011545 DEAD/DEAH_box_helicase_dom 3 85
No external refs found!