SymbC1.scaffold2632.2 (2632.2)


Aliases : 2632.2

Description : DNA ligase, ATP-dependent, C-terminal; DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, N-terminal [Interproscan].


Gene families : OG_01_0000772 (OrthoFinder) Phylogenetic Tree(s): OG0000772_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2632.2
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Cz01g42120.t1 No alias DNA ligase, ATP-dependent, C-terminal; DNA ligase,... 0.02 OrthoFinder
Sro1100_g241250.1 Contig937.g9737 DNA ligase 1 0.02 OrthoFinder
Transcript_contig_55247 55247 DNA ligase, ATP-dependent, N-terminal; DNA ligase,... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR012308 DNA_ligase_ATP-dep_N 45 227
IPR012310 DNA_ligase_ATP-dep_cent 310 516
IPR012309 DNA_ligase_ATP-dep_C 541 652
No external refs found!