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  5. SymbC1.scaffold262.5

SymbC1.scaffold262.5 (262.5)


Aliases : 262.5

Description : Ribonuclease H domain; Reverse transcriptase domain [Interproscan].


Gene families : OG_01_0000169 (OrthoFinder) Phylogenetic Tree(s): OG0000169_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold262.5
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1187.3 1187.3 C-5 cytosine methyltransferase [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold1613.2 1613.2 C-5 cytosine methyltransferase; Reverse transcriptase... 0.05 OrthoFinder
SymbC1.scaffold1709.3 1709.3 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold2236.1 2236.1 C-5 cytosine methyltransferase; Reverse transcriptase... 0.04 OrthoFinder
SymbC1.scaffold4890.1 4890.1 Reverse transcriptase domain [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold68.7 68.7 Reverse transcriptase domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold7591.2 7591.2 C-5 cytosine methyltransferase; Reverse transcriptase... 0.03 OrthoFinder
SymbC1.scaffold838.1 838.1 Reverse transcriptase domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold8643.1 8643.1 C-5 cytosine methyltransferase; Reverse transcriptase... 0.04 OrthoFinder
SymbC1.scaffold874.6 874.6 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold8956.2 8956.2 Reverse transcriptase domain [Interproscan]. 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0004127 cytidylate kinase activity IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 757 963
IPR002156 RNaseH_domain 1313 1470
No external refs found!