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  5. SymbC1.scaffold253.5

SymbC1.scaffold253.5 (253.5)


Aliases : 253.5

Description : Zinc finger, GRF-type [Interproscan].


Gene families : OG_01_0001243 (OrthoFinder) Phylogenetic Tree(s): OG0001243_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold253.5

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1097.4 1097.4 Zinc finger, CCHC-type; Reverse transcriptase,... 0.07 OrthoFinder
SymbC1.scaffold11564.1 11564.1 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold13709.1 13709.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
SymbC1.scaffold1425.1 1425.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.01 OrthoFinder
SymbC1.scaffold2739.3 2739.3 Major facilitator superfamily; Reverse transcriptase,... 0.01 OrthoFinder
SymbC1.scaffold588.5 588.5 Hypothetical protein 0.07 OrthoFinder
SymbC1.scaffold588.6 588.6 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold5890.2 5890.2 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold947.6 947.6 Reverse transcriptase, RNA-dependent DNA polymerase... 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0004127 cytidylate kinase activity IEP Enrichment
MF GO:0004743 pyruvate kinase activity IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
MF GO:0030955 potassium ion binding IEP Enrichment
MF GO:0031420 alkali metal ion binding IEP Enrichment
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
InterPro domains Description Start Stop
IPR010666 Znf_GRF 757 799
No external refs found!