Cpa|evm.model.tig00020554.32 (tig00020554_g10817.t1)

Aliases : tig00020554_g10817.t1

Description : Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF1A PIC assembly factor

Gene families : OG_01_0004024 (OrthoFinder) Phylogenetic Tree(s): OG0004024_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020554.32
Cluster	HCCA: Cluster_194

Target	Alias	Description	ECC score	Gene Family Method
EOD09064	No alias	RNA-binding domain, S1, IF1 type [Interproscan].	0.02	OrthoFinder
OT_13G01620.1	No alias	RNA-binding domain, S1, IF1 type [Interproscan].	0.02	OrthoFinder
PTI_01G03750.1	No alias	RNA-binding domain, S1, IF1 type [Interproscan].	0.04	OrthoFinder
Sro1192_g251030.1	Contig331.g4399	Eukaryotic translation initiation factor 1A	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003743	translation initiation factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Enrichment
MF	GO:0004540	ribonuclease activity	IEP	Enrichment
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	Enrichment
BP	GO:0006413	translational initiation	IEP	Enrichment
BP	GO:0006605	protein targeting	IEP	Enrichment
BP	GO:0006612	protein targeting to membrane	IEP	Enrichment
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Enrichment
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Enrichment
MF	GO:0008312	7S RNA binding	IEP	Enrichment
BP	GO:0033365	protein localization to organelle	IEP	Enrichment
BP	GO:0034613	cellular protein localization	IEP	Enrichment
BP	GO:0045047	protein targeting to ER	IEP	Enrichment
CC	GO:0048500	signal recognition particle	IEP	Enrichment
BP	GO:0051668	localization within membrane	IEP	Enrichment
BP	GO:0070727	cellular macromolecule localization	IEP	Enrichment
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Enrichment
BP	GO:0072594	establishment of protein localization to organelle	IEP	Enrichment
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Enrichment
BP	GO:0072657	protein localization to membrane	IEP	Enrichment
BP	GO:0090150	establishment of protein localization to membrane	IEP	Enrichment
CC	GO:1990904	ribonucleoprotein complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006196	RNA-binding_domain_S1_IF1	31	92

External Links

No external refs found!