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  5. SymbC1.scaffold25.45

SymbC1.scaffold25.45 (25.45)


Aliases : 25.45

Description : ABC transporter substrate-binding protein PnrA-like; Non-haem dioxygenase N-terminal domain; Oxoglutarate/iron-dependent dioxygenase [Interproscan].


Gene families : OG_01_0000184 (OrthoFinder) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold25.45
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Dusal.0187s00005.1 33194163 Oxoglutarate/iron-dependent dioxygenase; Non-haem... 0.02 OrthoFinder
SymbC1.scaffold1263.8 1263.8 Oxoglutarate/iron-dependent dioxygenase [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold29544.1 29544.1 Isopropylmalate dehydrogenase-like domain; Non-haem... 0.06 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
InterPro domains Description Start Stop
IPR026992 DIOX_N 358 482
IPR003760 PnrA-like 12 290
IPR005123 Oxoglu/Fe-dep_dioxygenase 529 628
No external refs found!