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  5. SymbC1.scaffold25.258

SymbC1.scaffold25.258 (25.258)


Aliases : 25.258

Description : Solute-binding protein family 3/N-terminal domain of MltF; ABC transporter type 1, transmembrane domain MetI-like; DapA-like [Interproscan].


Gene families : OG_01_0001767 (OrthoFinder) Phylogenetic Tree(s): OG0001767_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold25.258
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold2.1725 2.1725 DapA-like [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold4.648 4.648 NlpB/DapX lipoprotein; DapA-like;... 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0016829 lyase activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001539 cilium or flagellum-dependent cell motility IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
MF GO:0008320 protein transmembrane transporter activity IEP Enrichment
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Enrichment
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
CC GO:0009428 bacterial-type flagellum basal body, distal rod, P ring IEP Enrichment
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0022884 macromolecule transmembrane transporter activity IEP Enrichment
CC GO:0030288 outer membrane-bounded periplasmic space IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
CC GO:0042597 periplasmic space IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
BP GO:0048870 cell motility IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0071973 bacterial-type flagellum-dependent cell motility IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097588 archaeal or bacterial-type flagellum-dependent cell motility IEP Enrichment
MF GO:0140318 protein transporter activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR000515 MetI-like 506 688
IPR001638 Solute-binding_3/MltF_N 252 472
IPR002220 DapA-like 8 191
No external refs found!