SymbC1.scaffold25.194 (25.194)


Aliases : 25.194

Description : Transcription regulator HTH, GntR; ABC transporter-like; ABC transporter type 1, transmembrane domain MetI-like; GntR, C-terminal; Oligopeptide/dipeptide ABC transporter, C-terminal; Oligopeptide transport permease C-like, N-terminal domain [Interproscan].


Gene families : OG_01_0000747 (OrthoFinder) Phylogenetic Tree(s): OG0000747_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold25.194
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold217.54 217.54 Phytanoyl-CoA dioxygenase; ABC transporter-like; ABC... 0.06 OrthoFinder
SymbC1.scaffold25.223 25.223 ABC transporter-like; ABC transporter type 1,... 0.04 OrthoFinder
SymbC1.scaffold4.1002 4.1002 Domain of unknown function DUF4976; Methyltransferase... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0015833 peptide transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity IEP Enrichment
MF GO:0003978 UDP-glucose 4-epimerase activity IEP Enrichment
MF GO:0004129 cytochrome-c oxidase activity IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004803 transposase activity IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008172 S-methyltransferase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008488 gamma-glutamyl carboxylase activity IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
BP GO:0008653 lipopolysaccharide metabolic process IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
MF GO:0008987 quinolinate synthetase A activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009060 aerobic respiration IEP Enrichment
BP GO:0009103 lipopolysaccharide biosynthetic process IEP Enrichment
BP GO:0009435 NAD biosynthetic process IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
BP GO:0017187 peptidyl-glutamic acid carboxylation IEP Enrichment
BP GO:0018200 peptidyl-glutamic acid modification IEP Enrichment
BP GO:0018214 protein carboxylation IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0031419 cobalamin binding IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000515 MetI-like 429 612
IPR000515 MetI-like 243 364
IPR013563 Oligopep_ABC_C 872 936
IPR013563 Oligopep_ABC_C 1179 1239
IPR011711 GntR_C 1356 1433
IPR003439 ABC_transporter-like_ATP-bd 663 820
IPR000524 Tscrpt_reg_HTH_GntR 1267 1326
IPR000524 Tscrpt_reg_HTH_GntR 23 86
IPR003439 ABC_transporter-like_ATP-bd 977 1127
IPR025966 OppC_N 340 371
No external refs found!