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  5. SymbC1.scaffold2499.3

SymbC1.scaffold2499.3 (2499.3)


Aliases : 2499.3

Description : Ankyrin repeats (many copies); Ankyrin repeat-containing domain; Zinc finger, RING-type [Interproscan].


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2499.3
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Sro126_g060610.1 Contig82.g878 Protein ligase RNF181 0.01 OrthoFinder
Sro524_g159890.1 Contig202.g2386 Receptor homology region, transmembrane domain- and RING... 0.02 OrthoFinder
Sro65_g036790.1 Contig155.g1749 Protein ligase Arkadia 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58632.1_7739 PRW58632 E3 ubiquitin-ligase AIP2 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
InterPro domains Description Start Stop
IPR020683 Ankyrin_rpt-contain_dom 38 107
IPR001841 Znf_RING 383 426
No external refs found!