1. Home
  2. Species
  3. Cladocopium sp. clade C
  4. Sequence
  5. SymbC1.scaffold2475.1

SymbC1.scaffold2475.1 (2475.1)


Aliases : 2475.1

Description : Carbohydrate binding module family 20; Glycosyl hydrolase, family 13, catalytic domain; Alpha-amylase, C-terminal beta-sheet [Interproscan].


Gene families : OG_01_0000963 (OrthoFinder) Phylogenetic Tree(s): OG0000963_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2475.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Dusal.0430s00012.1 33200645 Alpha-amylase, C-terminal beta-sheet; Glycosyl... 0.04 OrthoFinder
OT_10G00260.1 No alias Alpha-amylase, C-terminal beta-sheet; Glycosyl... 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56160.1_10325 PRW56160 Glycoside hydrolase family 13 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004556 alpha-amylase activity IEA Interproscan
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:2001070 starch binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP Enrichment
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004451 isocitrate lyase activity IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
CC GO:0005779 integral component of peroxisomal membrane IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
BP GO:0015977 carbon fixation IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016559 peroxisome fission IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016833 oxo-acid-lyase activity IEP Enrichment
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Enrichment
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
BP GO:0048285 organelle fission IEP Enrichment
InterPro domains Description Start Stop
IPR002044 CBM_fam20 3 92
IPR006047 Glyco_hydro_13_cat_dom 249 522
IPR012850 A-amylase_bs_C 578 634
No external refs found!