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  5. SymbC1.scaffold2378.2

SymbC1.scaffold2378.2 (2378.2)


Aliases : 2378.2

Description : Zinc finger, Sec23/Sec24-type; Sec23/Sec24 beta-sandwich; Sec23/Sec24, trunk domain [Interproscan].


Gene families : OG_01_0000893 (OrthoFinder) Phylogenetic Tree(s): OG0000893_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2378.2
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000829.3 tig00000829_g4645.t1 Vesicle trafficking.Coat protein II (COPII) coatomer... 0.01 OrthoFinder
OT_12G02410.1 No alias Sec23/Sec24 beta-sandwich; Sec23/Sec24, trunk domain;... 0.02 OrthoFinder
XM_002507124.1 MICPUN_77748, 77748 Sec23/Sec24, helical domain; Sec23/Sec24 beta-sandwich;... 0.02 OrthoFinder
XM_003055317.1 MicpuC2_49909, 49909 Sec23/Sec24 beta-sandwich; Sec23/Sec24, helical domain;... 0.01 OrthoFinder
lcl|BLLF01000072.1_cds_GFH07061.1_1538 HaLaN_01810, GFH07061 COP-II coat subunit 0.01 OrthoFinder
lcl|BLLF01001733.1_cds_GFH20962.1_15439 HaLaN_18173, GFH20962 Sec23/Sec24 beta-sandwich; Sec23/Sec24, trunk domain... 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60099.1_6260 PRW60099 Transport Sec24-like protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
InterPro domains Description Start Stop
IPR012990 Sec23_24_beta_S 516 601
IPR006896 Sec23/24_trunk_dom 281 508
IPR006895 Znf_Sec23_Sec24 210 248
No external refs found!