1. Home
  2. Species
  3. Cladocopium sp. clade C
  4. Sequence
  5. SymbC1.scaffold235.6

SymbC1.scaffold235.6 (235.6)


Aliases : 235.6

Description : Ribosomal protein L1/ribosomal biogenesis protein [Interproscan].


Gene families : OG_01_0002677 (OrthoFinder) Phylogenetic Tree(s): OG0002677_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold235.6
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
Cre02.g101350 30786442, RPL10a Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder
Cz10g29200.t1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.03 OrthoFinder
OT_04G02990.1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.02 OrthoFinder
PTI_12G00410.1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.03 OrthoFinder
Sro1425_g271560.1 Contig1471.g13484 60S ribosomal protein L10a (Fragment) 0.03 OrthoFinder
TP06G01830.1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.03 OrthoFinder
Vocar.0036s0111.1 32892173 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.03 OrthoFinder
XM_002504810.1 MICPUN_95416, 95416 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.03 OrthoFinder
XM_003060702.1 MicpuC2_49658, 49658 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56513.1_9881 PRW56513 60S ribosomal L10a-1 0.01 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493814.1_4576 KAA8493814 60S ribosomal protein L10a 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 21 210
No external refs found!