SymbC1.scaffold2314.2 (2314.2)

Aliases : 2314.2

Description : Helicase/UvrB, N-terminal; Helicase-associated; Glycoside hydrolase family 47; Helicase, C-terminal [Interproscan].

Gene families : OG_01_0000030 (OrthoFinder) Phylogenetic Tree(s): OG0000030_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold2314.2

Target	Alias	Description	ECC score	Gene Family Method
PTI_22G02440.1	No alias	Helicase-associated [Interproscan].	0.02	OrthoFinder
Sro1131_g244680.1	Contig1944.g16712	Helicase	0.01	OrthoFinder
Sro30_g019670.1	Contig3962.g30367	Type III restriction enzyme, res subunit	0.01	OrthoFinder
TP03G04350.1	No alias	Helicase-associated [Interproscan].	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004559	alpha-mannosidase activity	None	Extended
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015923	mannosidase activity	None	Extended
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003774	motor activity	IEP	Enrichment
MF	GO:0003777	microtubule motor activity	IEP	Enrichment
BP	GO:0006928	movement of cell or subcellular component	IEP	Enrichment
BP	GO:0007017	microtubule-based process	IEP	Enrichment
BP	GO:0007018	microtubule-based movement	IEP	Enrichment
MF	GO:0008017	microtubule binding	IEP	Enrichment
MF	GO:0008092	cytoskeletal protein binding	IEP	Enrichment
MF	GO:0015631	tubulin binding	IEP	Enrichment
MF	GO:0016409	palmitoyltransferase activity	IEP	Enrichment
MF	GO:0016462	pyrophosphatase activity	IEP	Enrichment
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	Enrichment
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006935	Helicase/UvrB_N	195	342
IPR001650	Helicase_C	385	483
IPR001382	Glyco_hydro_47	1234	1270
IPR005114	Helicase_assoc	652	712
IPR005114	Helicase_assoc	580	642
IPR005114	Helicase_assoc	718	769

External Links

No external refs found!

SymbC1.scaffold2314.2 (2314.2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation