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  5. SymbC1.scaffold2305.2

SymbC1.scaffold2305.2 (2305.2)


Aliases : 2305.2

Description : 60S ribosomal protein L6E [Interproscan].


Gene families : OG_01_0002935 (OrthoFinder) Phylogenetic Tree(s): OG0002935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2305.2
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021127.127 tig00021127_g18807.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder
Cre01.g011000 30788989, RPL6 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder
Cz11g06080.t1 No alias 60S ribosomal protein L6E [Interproscan]. 0.07 OrthoFinder
Dusal.0521s00006.1 33197395 60S ribosomal protein L6E [Interproscan]. 0.06 OrthoFinder
OT_09G04060.1 No alias 60S ribosomal protein L6E [Interproscan]. 0.03 OrthoFinder
PTI_04G05480.1 No alias 60S ribosomal protein L6E [Interproscan]. 0.05 OrthoFinder
Sro189_g081570.1 Contig744.g8521 60S ribosomal protein L6 0.08 OrthoFinder
Sro68_g038220.1 Contig2027.g17403 60S ribosomal protein L6 0.07 OrthoFinder
Vocar.0013s0019.1 32896343 60S ribosomal protein L6E [Interproscan]. 0.03 OrthoFinder
XM_002504012.1 MICPUN_108678, 108678 60S ribosomal protein L6E [Interproscan]. 0.05 OrthoFinder
XM_003059548.1 MicpuC2_49628, 49628 60S ribosomal protein L6E [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57743.1_8428 PRW57743 60S ribosomal L6 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495926.1_1924 KAA8495926 60S ribosomal protein L6 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
MF GO:0070569 uridylyltransferase activity IEP Enrichment
BP GO:0071569 protein ufmylation IEP Enrichment
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 245 311
IPR000915 60S_ribosomal_L6E 338 378
No external refs found!