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  5. SymbC1.scaffold2271.3

SymbC1.scaffold2271.3 (2271.3)


Aliases : 2271.3

Description : Ubiquitin-like domain; Superoxide dismutase, Nickel-type [Interproscan].


Gene families : OG_01_0000054 (OrthoFinder) Phylogenetic Tree(s): OG0000054_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2271.3
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
Cre07.g322100 30774764, UBQ5 No description available 0.01 OrthoFinder
Cre11.g467567 30775991, UBQ1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder
EOD06802 No alias Ubiquitin-like domain [Interproscan]. 0.02 OrthoFinder
EOD14655 No alias Sde2, N-terminal ubiquitin domain [Interproscan]. 0.01 OrthoFinder
EOD15966 No alias Thioredoxin domain; Ubiquitin-like domain [Interproscan]. 0.04 OrthoFinder
OT_01G05450.1 No alias Superoxide dismutase, Nickel-type [Interproscan]. 0.03 OrthoFinder
OT_12G01090.1 No alias Ubiquitin-like domain [Interproscan]. 0.04 OrthoFinder
XM_002506486.1 MICPUN_64440, 64440 Superoxide dismutase, Nickel-type; Ubiquitin-like domain... 0.03 OrthoFinder
XM_002509204.1 MICPUN_63158, 63158 Sde2, N-terminal ubiquitin domain; Telomere stability... 0.02 OrthoFinder
lcl|LHPG02000010.1_cds_PRW50796.1_937 PRW50796 Polyubiquitin 3 isoform A 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497693.1_6646 KAA8497693 Polyubiquitin 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004784 superoxide dismutase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0016151 nickel cation binding IEA Interproscan
MF GO:0016209 antioxidant activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
InterPro domains Description Start Stop
IPR014123 Superoxide_dismutase_Ni-type 75 204
IPR000626 Ubiquitin-like_dom 16 72
No external refs found!