1. Home
  2. Species
  3. Cladocopium sp. clade C
  4. Sequence
  5. SymbC1.scaffold22.186

SymbC1.scaffold22.186 (22.186)


Aliases : 22.186

Description : Protein of unknown function DUF1501; Domain of unknown function DUF1553; Domain of unknown function DUF1549; RNA polymerase sigma-70 ECF-like; Sulfatase, N-terminal [Interproscan].


Gene families : OG_01_0000096 (OrthoFinder) Phylogenetic Tree(s): OG0000096_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold22.186
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.910 1.910 Domain of unknown function DUF1549; Protein of unknown... 0.04 OrthoFinder
SymbC1.scaffold21560.1 21560.1 Domain of unknown function DUF1549; Cytochrome C,... 0.04 OrthoFinder
SymbC1.scaffold22336.1 22336.1 Domain of unknown function DUF1549; Domain of unknown... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008484 sulfuric ester hydrolase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0005539 glycosaminoglycan binding IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008410 CoA-transferase activity IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0042834 peptidoglycan binding IEP Enrichment
InterPro domains Description Start Stop
IPR011444 DUF1549 1203 1413
IPR010869 DUF1501 1858 2182
IPR000917 Sulfatase_N 2551 2893
IPR022655 DUF1553 1544 1789
IPR011517 RNA_pol_sigma70_ECF-like 955 1150
No external refs found!