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  5. SymbC1.scaffold217.42

SymbC1.scaffold217.42 (217.42)


Aliases : 217.42

Description : ABC transporter type 1, transmembrane domain MetI-like; Solute-binding protein family 5 domain [Interproscan].


Gene families : OG_01_0000747 (OrthoFinder) Phylogenetic Tree(s): OG0000747_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold217.42
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold160.15 160.15 ABC transporter-like; ABC transporter type 1,... 0.05 OrthoFinder
SymbC1.scaffold172.58 172.58 ABC transporter-like; ABC transporter type 1,... 0.03 OrthoFinder
SymbC1.scaffold217.54 217.54 Phytanoyl-CoA dioxygenase; ABC transporter-like; ABC... 0.05 OrthoFinder
SymbC1.scaffold4.1002 4.1002 Domain of unknown function DUF4976; Methyltransferase... 0.03 OrthoFinder
SymbC1.scaffold4.1003 4.1003 ABC transporter type 1, transmembrane domain MetI-like... 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005539 glycosaminoglycan binding IEP Enrichment
BP GO:0006063 uronic acid metabolic process IEP Enrichment
BP GO:0006064 glucuronate catabolic process IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008927 mannonate dehydratase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019585 glucuronate metabolic process IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042834 peptidoglycan binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0051304 chromosome separation IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0072329 monocarboxylic acid catabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000515 MetI-like 585 783
IPR000914 SBP_5_dom 72 385
No external refs found!