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  5. SymbC1.scaffold2072.2

SymbC1.scaffold2072.2 (2072.2)


Aliases : 2072.2

Description : Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2072.2
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1030.5 1030.5 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold10380.1 10380.1 Integrase, catalytic core [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold1152.4 1152.4 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold12679.2 12679.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
SymbC1.scaffold13830.1 13830.1 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold2028.3 2028.3 Integrase, catalytic core [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold2036.2 2036.2 Zinc finger, CCHC-type [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold2297.4 2297.4 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold2374.4 2374.4 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold301.14 301.14 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold329.2 329.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
SymbC1.scaffold3297.5 3297.5 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold3612.1 3612.1 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold3876.2 3876.2 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold5249.3 5249.3 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold5583.1 5583.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold6253.2 6253.2 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold7099.2 7099.2 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold7159.1 7159.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
SymbC1.scaffold8751.1 8751.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold9481.1 9481.1 Hypothetical protein 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 258 273
No external refs found!