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  5. SymbC1.scaffold20710.1

SymbC1.scaffold20710.1 (20710.1)


Aliases : 20710.1

Description : Type II/IV secretion system protein; Type II secretion system protein GspE, N-terminal; Type II secretion system protein GspF domain [Interproscan].


Gene families : OG_01_0000353 (OrthoFinder) Phylogenetic Tree(s): OG0000353_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold20710.1
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.1256 1.1256 Prokaryotic N-terminal methylation site; Type II... 0.02 OrthoFinder
SymbC1.scaffold1.1725 1.1725 Prokaryotic N-terminal methylation site; Type II... 0.02 OrthoFinder
SymbC1.scaffold1.1726 1.1726 General secretion pathway protein K [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold1.1799 1.1799 PAS fold; Histidine kinase/HSP90-like ATPase; Signal... 0.05 OrthoFinder
SymbC1.scaffold2.1699 2.1699 Type II secretion system protein GspF domain [Interproscan]. 0.06 OrthoFinder
SymbC1.scaffold2.1824 2.1824 Type II secretion system protein GspE, N-terminal;... 0.05 OrthoFinder
SymbC1.scaffold2.1881 2.1881 Type II secretion system protein GspE, N-terminal; Type... 0.04 OrthoFinder
SymbC1.scaffold2.422 2.422 Pterin 4 alpha carbinolamine dehydratase; Type II... 0.03 OrthoFinder
SymbC1.scaffold23491.1 23491.1 Prokaryotic N-terminal methylation site; Type II... 0.04 OrthoFinder
SymbC1.scaffold39805.1 39805.1 Type II/IV secretion system protein; Type II secretion... 0.04 OrthoFinder
SymbC1.scaffold4.276 4.276 Helix-turn-helix, HxlR type; NIPSNAP; GNAT domain;... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0004127 cytidylate kinase activity IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
InterPro domains Description Start Stop
IPR018076 T2SS_GspF_dom 583 703
IPR001482 T2SS/T4SS 157 421
IPR007831 T2SS_GspE_N 7 110
No external refs found!