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  5. SymbC1.scaffold20482.1

SymbC1.scaffold20482.1 (20482.1)


Aliases : 20482.1

Description : Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain; Biotin carboxylase-like, N-terminal domain; Biotin carboxylase, C-terminal [Interproscan].


Gene families : OG_01_0000176 (OrthoFinder) Phylogenetic Tree(s): OG0000176_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold20482.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
Cz15g20050.t1 No alias Carbamoyl-phosphate synthetase large subunit-like,... 0.01 OrthoFinder
SymbC1.scaffold113.25 113.25 Carboxylase, conserved domain; Biotin/lipoyl attachment;... 0.02 OrthoFinder
SymbC1.scaffold2.1783 2.1783 Carbamoyl-phosphate synthetase large subunit-like,... 0.03 OrthoFinder
SymbC1.scaffold4.1571 4.1571 Domain of unknown function DUF1989; Carboxyltransferase... 0.07 OrthoFinder
SymbC1.scaffold4.1754 4.1754 Biotin/lipoyl attachment; Carbamoyl-phosphate synthetase... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Enrichment
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Enrichment
MF GO:0004057 arginyltransferase activity IEP Enrichment
MF GO:0004150 dihydroneopterin aldolase activity IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0006873 cellular ion homeostasis IEP Enrichment
BP GO:0006875 cellular metal ion homeostasis IEP Enrichment
BP GO:0006879 cellular iron ion homeostasis IEP Enrichment
MF GO:0008199 ferric iron binding IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016229 steroid dehydrogenase activity IEP Enrichment
BP GO:0016598 protein arginylation IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
BP GO:0030003 cellular cation homeostasis IEP Enrichment
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0046916 cellular transition metal ion homeostasis IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
BP GO:0055065 metal ion homeostasis IEP Enrichment
BP GO:0055072 iron ion homeostasis IEP Enrichment
BP GO:0055076 transition metal ion homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
BP GO:0055082 cellular chemical homeostasis IEP Enrichment
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
InterPro domains Description Start Stop
IPR005482 Biotin_COase_C 315 423
IPR005479 CbamoylP_synth_lsu-like_ATP-bd 115 317
IPR005481 BC-like_N 1 110
No external refs found!