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  5. Cpa|evm.model.tig00020553.146

Cpa|evm.model.tig00020553.146 (tig00020553_g10637.t1)


Aliases : tig00020553_g10637.t1

Description : Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020553.146
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cre01.g024200 30788323 RNA processing.RNA 3-end polyadenylation.Cleavage... 0.04 OrthoFinder
Cre02.g079400 30785182 No description available 0.04 OrthoFinder
Cre06.g288750 30780037, CBP20 No description available 0.04 OrthoFinder
Cre09.g392350 30780381 Glycine-rich RNA-binding protein 2, mitochondrial... 0.02 OrthoFinder
Cre17.g729150 30782801 No description available 0.01 OrthoFinder
Cz06g14010.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Cz07g27210.t1 No alias RNA recognition motif domain; Cleavage stimulation... 0.01 OrthoFinder
Cz08g09080.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Cz08g24230.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Dusal.0108s00022.1 33189529 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
EOD23362 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
EOD31760 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
OT_01G05710.1 No alias RNA recognition motif domain; Cleavage stimulation... 0.02 OrthoFinder
OT_04G03540.1 No alias RNA recognition motif domain; Zinc finger, CCCH-type... 0.02 OrthoFinder
PTI_08G03190.1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Sro1655_g289020.1 Contig2908.g23148 Stimulation factor subunit 2 tau variant 0.03 OrthoFinder
Transcript_contig_3626 3626 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
XM_002504161.1 MICPUN_76997, 76997 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
XM_003062259.1 MicpuC2_42094, 42094 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000187.1_cds_GFH08821.1_3298 HaLaN_03852, GFH08821 RRM domain-containing protein 0.01 OrthoFinder
lcl|BLLF01007141.1_cds_GFH32791.1_27268 HaLaN_32072, GFH32791 RRM domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0000339 RNA cap binding IEP Enrichment
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Enrichment
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004109 coproporphyrinogen oxidase activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005664 nuclear origin of replication recognition complex IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
CC GO:0034464 BBSome IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 31 100
No external refs found!