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  5. Cpa|evm.model.tig00000114.38

Cpa|evm.model.tig00000114.38 (tig00000114_g6046.t1)


Aliases : tig00000114_g6046.t1

Description : Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana


Gene families : OG_01_0000139 (OrthoFinder) Phylogenetic Tree(s): OG0000139_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000114.38
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
PTI_01G04190.1 No alias CbbX, AAA lid domain; ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01002282.1_cds_GFH23475.1_17952 HaLaN_21091, GFH23475 NFX1-type zinc finger-containing protein 1 0.03 OrthoFinder
lcl|BLLF01002282.1_cds_GFH23476.1_17953 HaLaN_21092, GFH23476 NFX1-type zinc finger-containing protein 1 0.02 OrthoFinder
lcl|BLLF01002282.1_cds_GFH23478.1_17955 HaLaN_21094, GFH23478 Helicase ATP-binding domain-containing protein 0.03 OrthoFinder
lcl|BLLF01002405.1_cds_GFH23953.1_18430 HaLaN_21657, GFH23953 DNA2/NAM7 helicase, AAA domain; ATPase, AAA-type, core;... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
CC GO:0030076 light-harvesting complex IEP Enrichment
CC GO:0030089 phycobilisome IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR041677 DNA2/NAM7_AAA_11 582 784
IPR041677 DNA2/NAM7_AAA_11 1093 1215
IPR041679 DNA2/NAM7-like_C 1227 1415
No external refs found!