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  5. SymbC1.scaffold20.292

SymbC1.scaffold20.292 (20.292)


Aliases : 20.292

Description : Clp ATPase, C-terminal; ATPase, AAA-type, core; Clp, N-terminal; ClpA/ClpB, AAA lid domain [Interproscan].


Gene families : OG_01_0000068 (OrthoFinder) Phylogenetic Tree(s): OG0000068_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold20.292
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Dusal.1244s00001.1 33189049 ATPase, AAA-type, core; ClpA/ClpB, AAA lid domain; Clp... 0.01 OrthoFinder
SymbC1.scaffold1.2349 1.2349 Heat shock protein 70 family; Clp, N-terminal; Clp... 0.05 OrthoFinder
SymbC1.scaffold685.19 685.19 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA... 0.02 OrthoFinder
XM_003057844.1 MicpuC2_45481, 45481 ClpA/ClpB, AAA lid domain; Clp, N-terminal; ATPase,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
BP GO:0000270 peptidoglycan metabolic process IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006026 aminoglycan catabolic process IEP Enrichment
BP GO:0006027 glycosaminoglycan catabolic process IEP Enrichment
MF GO:0008488 gamma-glutamyl carboxylase activity IEP Enrichment
MF GO:0008745 N-acetylmuramoyl-L-alanine amidase activity IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009253 peptidoglycan catabolic process IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
BP GO:0017187 peptidyl-glutamic acid carboxylation IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018200 peptidyl-glutamic acid modification IEP Enrichment
BP GO:0018214 protein carboxylation IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
BP GO:0030203 glycosaminoglycan metabolic process IEP Enrichment
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
MF GO:0061783 peptidoglycan muralytic activity IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR019489 Clp_ATPase_C 673 720
IPR041546 ClpA/ClpB_AAA_lid 343 374
IPR003959 ATPase_AAA_core 204 317
IPR003959 ATPase_AAA_core 563 676
IPR004176 Clp_R_dom 17 68
IPR004176 Clp_R_dom 94 145
No external refs found!