SymbC1.scaffold20.274 (20.274)

Aliases : 20.274

Description : Glycoside hydrolase, family 24 [Interproscan].

Gene families : OG_01_0004644 (OrthoFinder) Phylogenetic Tree(s): OG0004644_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold20.274
Cluster	HCCA: Cluster_3

Target	Alias	Description	ECC score	Gene Family Method
SymbC1.scaffold113.93	113.93	Sensor histidine kinase (AbfS), sensor domain; HAMP...	0.04	OrthoFinder
SymbC1.scaffold20.6	20.6	Glycoside hydrolase, family 24; Histidine...	0.03	OrthoFinder
SymbC1.scaffold25.92	25.92	HAMP domain; Signal transduction histidine kinase,...	0.02	OrthoFinder
SymbC1.scaffold39.70	39.70	Signal transduction response regulator, receiver domain;...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0000270	peptidoglycan metabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003796	lysozyme activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
BP	GO:0006022	aminoglycan metabolic process	None	Extended
BP	GO:0006026	aminoglycan catabolic process	None	Extended
BP	GO:0006027	glycosaminoglycan catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009253	peptidoglycan catabolic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	IEA	Interproscan
BP	GO:0030203	glycosaminoglycan metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0061783	peptidoglycan muralytic activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003842	1-pyrroline-5-carboxylate dehydrogenase activity	IEP	Enrichment
MF	GO:0003919	FMN adenylyltransferase activity	IEP	Enrichment
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Enrichment
MF	GO:0004325	ferrochelatase activity	IEP	Enrichment
MF	GO:0005539	glycosaminoglycan binding	IEP	Enrichment
BP	GO:0006783	heme biosynthetic process	IEP	Enrichment
MF	GO:0008531	riboflavin kinase activity	IEP	Enrichment
MF	GO:0008716	D-alanine-D-alanine ligase activity	IEP	Enrichment
MF	GO:0008762	UDP-N-acetylmuramate dehydrogenase activity	IEP	Enrichment
MF	GO:0009002	serine-type D-Ala-D-Ala carboxypeptidase activity	IEP	Enrichment
MF	GO:0016491	oxidoreductase activity	IEP	Enrichment
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Enrichment
MF	GO:0019842	vitamin binding	IEP	Enrichment
MF	GO:0031419	cobalamin binding	IEP	Enrichment
BP	GO:0042168	heme metabolic process	IEP	Enrichment
MF	GO:0042834	peptidoglycan binding	IEP	Enrichment
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Enrichment
BP	GO:0051301	cell division	IEP	Enrichment
BP	GO:0055114	obsolete oxidation-reduction process	IEP	Enrichment
MF	GO:0070402	NADPH binding	IEP	Enrichment
MF	GO:0070566	adenylyltransferase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002196	Glyco_hydro_24	120	225

External Links

No external refs found!

SymbC1.scaffold20.274 (20.274)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation