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  5. SymbC1.scaffold20.236

SymbC1.scaffold20.236 (20.236)


Aliases : 20.236

Description : PDZ domain; Serine aminopeptidase, S33; Trypsin-like peptidase domain; Chaperone DnaJ, C-terminal; OsmC/Ohr family; DnaJ domain; GTA TIM-barrel-like domain; Tip attachment protein J [Interproscan].


Gene families : OG_01_0000099 (OrthoFinder) Phylogenetic Tree(s): OG0000099_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold20.236
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Cre12.g498500 30793568, DEG11 Protein degradation.peptidase families.serine-type... 0.01 OrthoFinder
SymbC1.scaffold25.108 25.108 Cupin 2, conserved barrel; ABC transporter type 1,... 0.03 OrthoFinder
Transcript_contig_53695 53695 Trypsin-like peptidase domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_55915 55915 PDZ domain; Trypsin-like peptidase domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000270 peptidoglycan metabolic process IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006026 aminoglycan catabolic process IEP Enrichment
BP GO:0006027 glycosaminoglycan catabolic process IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008745 N-acetylmuramoyl-L-alanine amidase activity IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009253 peptidoglycan catabolic process IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0030203 glycosaminoglycan metabolic process IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
MF GO:0061783 peptidoglycan muralytic activity IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR032876 J_dom 184 346
IPR003718 OsmC/Ohr_fam 1804 1890
IPR001478 PDZ 2264 2338
IPR001478 PDZ 2150 2241
IPR001623 DnaJ_domain 769 831
IPR002939 DnaJ_C 902 1046
IPR022742 Hydrolase_4 1540 1628
IPR025195 GTA_TIM_dom 58 126
No external refs found!