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Aliases : 2.903
Description : Xylose isomerase-like, TIM barrel domain; S1 domain [Interproscan].
Gene families : OG_01_0000672 (OrthoFinder) Phylogenetic Tree(s): OG0000672_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: SymbC1.scaffold2.903 | |
| Cluster | HCCA: Cluster_147 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| SymbC1.scaffold1.309 | 1.309 | RNA polymerase sigma-70 region 2; S1 domain [Interproscan]. | 0.03 | OrthoFinder | |
| SymbC1.scaffold19.166 | 19.166 | S1 domain; Cytidylate kinase domain [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold4.1417 | 4.1417 | Prephenate dehydrogenase; S1 domain; Cytidylate kinase... | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | Enrichment |
| MF | GO:0000287 | magnesium ion binding | IEP | Enrichment |
| MF | GO:0004375 | glycine dehydrogenase (decarboxylating) activity | IEP | Enrichment |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006544 | glycine metabolic process | IEP | Enrichment |
| BP | GO:0006546 | glycine catabolic process | IEP | Enrichment |
| BP | GO:0007165 | signal transduction | IEP | Enrichment |
| BP | GO:0009063 | cellular amino acid catabolic process | IEP | Enrichment |
| BP | GO:0009069 | serine family amino acid metabolic process | IEP | Enrichment |
| BP | GO:0009071 | serine family amino acid catabolic process | IEP | Enrichment |
| BP | GO:0016054 | organic acid catabolic process | IEP | Enrichment |
| MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Enrichment |
| MF | GO:0016642 | oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor | IEP | Enrichment |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| MF | GO:0030551 | cyclic nucleotide binding | IEP | Enrichment |
| MF | GO:0030976 | thiamine pyrophosphate binding | IEP | Enrichment |
| MF | GO:0035438 | cyclic-di-GMP binding | IEP | Enrichment |
| BP | GO:0035556 | intracellular signal transduction | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| BP | GO:0044282 | small molecule catabolic process | IEP | Enrichment |
| BP | GO:0046395 | carboxylic acid catabolic process | IEP | Enrichment |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Enrichment |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Enrichment |
| BP | GO:1901606 | alpha-amino acid catabolic process | IEP | Enrichment |
| MF | GO:1901681 | sulfur compound binding | IEP | Enrichment |
| BP | GO:1902600 | proton transmembrane transport | IEP | Enrichment |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Enrichment |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Enrichment |
| No external refs found! |