SymbC1.scaffold2.343 (2.343)

Aliases : 2.343

Description : Transcription regulator LuxR, C-terminal; PhoR, single Cache-like domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; HAMP domain; PAS fold-4; PBP domain; Signal transduction histidine kinase, dimerisation/phosphoacceptor domain; Histidine kinase/HSP90-like ATPase; Signal transduction response regulator, receiver domain; Double Cache domain 1 [Interproscan].

Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold2.343
Cluster	HCCA: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cpa\|evm.model.tig00000158.93	tig00000158_g10200.t1	Probable histidine kinase 5 OS=Oryza sativa subsp. japonica	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEA	Interproscan
BP	GO:0000160	phosphorelay signal transduction system	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004673	protein histidine kinase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140299	small molecule sensor activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0009055	electron transfer activity	IEP	Enrichment
MF	GO:0020037	heme binding	IEP	Enrichment
MF	GO:0046906	tetrapyrrole binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003661	HisK_dim/P	1264	1331
IPR003594	HATPase_C	495	582
IPR003594	HATPase_C	1378	1488
IPR031967	PhoR_single_Cache-like_dom	939	1057
IPR001789	Sig_transdc_resp-reg_receiver	591	698
IPR011712	Sig_transdc_His_kin_sub3_dim/P	386	451
IPR033479	dCache_1	51	273
IPR024370	PBP_domain	1558	1784
IPR013656	PAS_4	1157	1260
IPR003660	HAMP_dom	1089	1139
IPR000792	Tscrpt_reg_LuxR_C	731	777

External Links

No external refs found!

SymbC1.scaffold2.343 (2.343)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation