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  5. SymbC1.scaffold2.2228

SymbC1.scaffold2.2228 (2.2228)


Aliases : 2.2228

Description : Recombination protein RecR, C4-type zinc finger; TOPRIM domain [Interproscan].


Gene families : OG_01_0006005 (OrthoFinder) Phylogenetic Tree(s): OG0006005_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2.2228
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.1136 1.1136 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold1.1749 1.1749 UvrC family homology region; NAD-dependent... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000270 peptidoglycan metabolic process IEP Enrichment
BP GO:0000272 polysaccharide catabolic process IEP Enrichment
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0005342 organic acid transmembrane transporter activity IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006026 aminoglycan catabolic process IEP Enrichment
BP GO:0006027 glycosaminoglycan catabolic process IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
MF GO:0008028 monocarboxylic acid transmembrane transporter activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0008745 N-acetylmuramoyl-L-alanine amidase activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009253 peptidoglycan catabolic process IEP Enrichment
MF GO:0015129 lactate transmembrane transporter activity IEP Enrichment
BP GO:0015711 organic anion transport IEP Enrichment
BP GO:0015718 monocarboxylic acid transport IEP Enrichment
BP GO:0015727 lactate transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0015850 organic hydroxy compound transport IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
BP GO:0030203 glycosaminoglycan metabolic process IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0046942 carboxylic acid transport IEP Enrichment
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Enrichment
MF GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity IEP Enrichment
MF GO:0061783 peptidoglycan muralytic activity IEP Enrichment
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR006171 TOPRIM_domain 372 461
IPR023628 Rcmb_RecR_C4-type_Zn 329 368
No external refs found!