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  5. SymbC1.scaffold2.2120

SymbC1.scaffold2.2120 (2.2120)


Aliases : 2.2120

Description : PDZ domain; Trypsin-like peptidase domain [Interproscan].


Gene families : OG_01_0013550 (OrthoFinder) Phylogenetic Tree(s): OG0013550_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2.2120
Cluster HCCA: Cluster_280

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold16.229 16.229 PDZ domain; Glycosyl hydrolase family 98, putative... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Enrichment
MF GO:0004150 dihydroneopterin aldolase activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
MF GO:0016229 steroid dehydrogenase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
InterPro domains Description Start Stop
IPR001478 PDZ 511 593
IPR001478 PDZ 603 682
No external refs found!