SymbC1.scaffold2.2000 (2.2000)

Aliases : 2.2000

Description : Condensation domain; MacB-like periplasmic core domain; AMP-binding enzyme, C-terminal domain; Pyridine nucleotide-disulphide oxidoreductase; AMP-dependent synthetase/ligase; ABC transporter permease protein domain; Phosphopantetheine binding ACP domain [Interproscan].

Gene families : OG_01_0000621 (OrthoFinder) Phylogenetic Tree(s): OG0000621_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: SymbC1.scaffold2.2000
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Sro184_g079840.1 Contig2216.g18387 Putative fatty-acid--CoA ligase FadD21 0.01 OrthoFinder
Sro2001_g310290.1 Contig2691.g21730 Putative fatty-acid--CoA ligase FadD21 0.01 OrthoFinder
Sro550_g164710.1 Contig731.g8401 Putative fatty-acid--CoA ligase FadD21 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004057 arginyltransferase activity IEP Enrichment
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0016598 protein arginylation IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig 2104 2509
IPR000873 AMP-dep_Synth/Lig 378 824
IPR009081 PP-bd_ACP 2622 2681
IPR009081 PP-bd_ACP 964 1026
IPR025110 AMP-bd_C 2517 2592
IPR025857 MacB_PCD 2 196
IPR003838 ABC3_permease_dom 254 341
IPR001242 Condensatn 1639 2083
IPR001242 Condensatn 2698 3148
No external refs found!