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  5. SymbC1.scaffold2.1994

SymbC1.scaffold2.1994 (2.1994)


Aliases : 2.1994

Description : Malic enzyme, NAD-binding; Succinate dehydogenase/fumarate reductase N-terminal; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; 4Fe-4S ferredoxin-type, iron-sulphur binding domain; Malic enzyme, N-terminal domain; Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal; FAD-dependent oxidoreductase 2, FAD binding domain [Interproscan].


Gene families : OG_01_0000227 (OrthoFinder) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2.1994
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
lcl|BLLF01001907.1_cds_GFH21794.1_16271 HaLaN_19162, GFH21794 Malic enzyme 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEA Interproscan
MF GO:0009055 electron transfer activity IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
MF GO:0030976 thiamine pyrophosphate binding IEA Interproscan
MF GO:0051287 NAD binding IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0031419 cobalamin binding IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
InterPro domains Description Start Stop
IPR012302 Malic_NAD-bd 269 529
IPR012301 Malic_N_dom 80 259
IPR025192 Succ_DH/fum_Rdtase_N 1418 1534
IPR011766 TPP_enzyme-bd_C 2032 2178
IPR017896 4Fe4S_Fe-S-bd 1570 1642
IPR012000 Thiamin_PyroP_enz_cen_dom 1838 1972
IPR015939 Fum_Rdtase/Succ_DH_flav-like_C 1267 1399
IPR003953 FAD-binding_2 801 1205
IPR012001 Thiamin_PyroP_enz_TPP-bd_dom 1663 1816
No external refs found!