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  5. SymbC1.scaffold2.1699

SymbC1.scaffold2.1699 (2.1699)


Aliases : 2.1699

Description : Type II secretion system protein GspF domain [Interproscan].


Gene families : OG_01_0000353 (OrthoFinder) Phylogenetic Tree(s): OG0000353_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2.1699
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.1799 1.1799 PAS fold; Histidine kinase/HSP90-like ATPase; Signal... 0.04 OrthoFinder
SymbC1.scaffold2.1824 2.1824 Type II secretion system protein GspE, N-terminal;... 0.04 OrthoFinder
SymbC1.scaffold2.1881 2.1881 Type II secretion system protein GspE, N-terminal; Type... 0.03 OrthoFinder
SymbC1.scaffold2.422 2.422 Pterin 4 alpha carbinolamine dehydratase; Type II... 0.03 OrthoFinder
SymbC1.scaffold2.857 2.857 General secretion pathway protein K [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold20710.1 20710.1 Type II/IV secretion system protein; Type II secretion... 0.06 OrthoFinder
SymbC1.scaffold23491.1 23491.1 Prokaryotic N-terminal methylation site; Type II... 0.02 OrthoFinder
SymbC1.scaffold32.5 32.5 PhoU domain; NolW-like; Type II/III secretion system... 0.03 OrthoFinder
SymbC1.scaffold39805.1 39805.1 Type II/IV secretion system protein; Type II secretion... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
CC GO:0009427 bacterial-type flagellum basal body, distal rod, L ring IEP Enrichment
CC GO:0009428 bacterial-type flagellum basal body, distal rod, P ring IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
CC GO:0030288 outer membrane-bounded periplasmic space IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
InterPro domains Description Start Stop
IPR018076 T2SS_GspF_dom 281 401
No external refs found!