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  5. SymbC1.scaffold1979.3

SymbC1.scaffold1979.3 (1979.3)


Aliases : 1979.3

Description : Ribosomal protein L22/L17 [Interproscan].


Gene families : OG_01_0003841 (OrthoFinder) Phylogenetic Tree(s): OG0003841_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1979.3
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001215.8 tig00001215_g7572.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder
Cre13.g568900 30784330, RPL17 Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder
Cz08g22070.t1 No alias Ribosomal protein L22/L17 [Interproscan]. 0.08 OrthoFinder
Dusal.0117s00014.1 33191086 Ribosomal protein L22/L17 [Interproscan]. 0.06 OrthoFinder
EOD18576 No alias Ribosomal protein L22/L17 [Interproscan]. 0.01 OrthoFinder
OT_06G03040.1 No alias Ribosomal protein L22/L17 [Interproscan]. 0.04 OrthoFinder
PTI_15G02710.1 No alias Ribosomal protein L22/L17 [Interproscan]. 0.07 OrthoFinder
Sro490_g153560.1 Contig328.g4376 60S ribosomal protein L17 0.09 OrthoFinder
TP03G04610.1 No alias Ribosomal protein L22/L17 [Interproscan]. 0.06 OrthoFinder
Vocar.0001s0273.1 32884978 Ribosomal protein L22/L17 [Interproscan]. 0.02 OrthoFinder
XM_002499746.1 MICPUN_93345, 93345 Ribosomal protein L22/L17 [Interproscan]. 0.05 OrthoFinder
XM_003062075.1 MicpuC2_49699, 49699 Ribosomal protein L22/L17 [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000229.1_cds_GFH09375.1_3852 HaLaN_04499, GFH09375 Component of cytosolic 80S ribosome and 60S large subunit 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499482.1_8435 KAA8499482 60S ribosomal protein L17 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
BP GO:0006897 endocytosis IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001063 Ribosomal_L22 1 113
No external refs found!