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  5. SymbC1.scaffold193.5

SymbC1.scaffold193.5 (193.5)


Aliases : 193.5

Description : ABC-2 type transporter; ABC transporter-like [Interproscan].


Gene families : OG_01_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold193.5
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001130.22 tig00001130_g7252.t1 ABC transporter G family member 22 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz02g00110.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.02 OrthoFinder
Cz02g27230.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
Cz03g15170.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
Cz03g22070.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
OT_05G03580.1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
PTI_06G00650.1 No alias ABC transporter-like; ABC-2 type transporter [Interproscan]. 0.01 OrthoFinder
Sro14_g010700.1 Contig1128.g10819 Putative white-brown complex homolog protein 30 0.02 OrthoFinder
Sro997_g229380.1 Contig4588.g34260 Putative white-brown complex homolog protein 30 0.01 OrthoFinder
TP03G06240.1 No alias ABC transporter-like; ABC-2 type transporter [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54121 54121 ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
Transcript_contig_89748 89748 ABC transporter-like [Interproscan]. 0.01 OrthoFinder
XM_003063060.1 MicpuC2_52802, 52802 ATP-binding cassette superfamily 0.01 OrthoFinder
lcl|BLLF01000112.1_cds_GFH07732.1_2209 HaLaN_02574, GFH07732 ABC transporter domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56065.1_10007 PRW56065 ABC transporter G family member 22 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498384.1_7337 KAA8498384 ABC transporter G family member 22 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493197.1_9498 KAA8493197 ABC transporter G family member 15 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 650 816
IPR003439 ABC_transporter-like_ATP-bd 247 399
No external refs found!