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  5. SymbC1.scaffold1910.3

SymbC1.scaffold1910.3 (1910.3)


Aliases : 1910.3

Description : Zinc finger, CCHC-type; Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0000232 (OrthoFinder) Phylogenetic Tree(s): OG0000232_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1910.3

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold10348.1 10348.1 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold1120.2 1120.2 Zinc finger, CCHC-type [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold1606.6 1606.6 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold189.5 189.5 Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
SymbC1.scaffold2340.1 2340.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
SymbC1.scaffold3230.2 3230.2 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold3862.3 3862.3 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold4353.2 4353.2 Zinc finger, CCHC-type; Reverse transcriptase,... 0.02 OrthoFinder
SymbC1.scaffold5287.1 5287.1 Zinc finger, CCHC-type [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold541.2 541.2 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold5752.1 5752.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 1329 1559
IPR001878 Znf_CCHC 291 306
No external refs found!