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  5. SymbC1.scaffold17968.2

SymbC1.scaffold17968.2 (17968.2)


Aliases : 17968.2

Description : PDZ domain; Trypsin-like peptidase domain; PDZ domain 6; Endoribonuclease L-PSP/chorismate mutase-like; YjeF N-terminal domain [Interproscan].


Gene families : OG_01_0002896 (OrthoFinder) Phylogenetic Tree(s): OG0002896_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold17968.2
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold34125.1 34125.1 Pyrrolo-quinoline quinone repeat; Endoribonuclease... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Enrichment
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004150 dihydroneopterin aldolase activity IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016229 steroid dehydrogenase activity IEP Enrichment
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
InterPro domains Description Start Stop
IPR004443 YjeF_N_dom 184 230
IPR001478 PDZ 417 508
IPR041489 PDZ_6 564 614
IPR013813 Endoribo_LPSP/chorism_mut-like 4 145
No external refs found!