SymbC1.scaffold172.55 (172.55)


Aliases : 172.55

Description : Rhodanese-like domain; Alanyl-tRNA synthetase, class IIc, N-terminal; Pyridoxal-phosphate dependent enzyme; Phosphoribosyl-AMP cyclohydrolase domain; Cys/Met metabolism, pyridoxal phosphate-dependent enzyme [Interproscan].


Gene families : OG_01_0001984 (OrthoFinder) Phylogenetic Tree(s): OG0001984_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold172.55
Cluster HCCA: Cluster_106


Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEA Interproscan
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEA Interproscan
MF GO:0004813 alanine-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006419 alanyl-tRNA aminoacylation IEA Interproscan
BP GO:0019346 transsulfuration IEA Interproscan
MF GO:0030170 pyridoxal phosphate binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0004560 alpha-L-fucosidase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0015833 peptide transport IEP Enrichment
MF GO:0015928 fucosidase activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019748 secondary metabolic process IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
MF GO:0031419 cobalamin binding IEP Enrichment
BP GO:0042886 amide transport IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR018164 Ala-tRNA-synth_IIc_N 307 382
IPR001926 PLP-dep 12 283
IPR000277 Cys/Met-Metab_PyrdxlP-dep_enz 1029 1285
IPR001763 Rhodanese-like_dom 479 597
IPR001763 Rhodanese-like_dom 628 742
IPR002496 PRib_AMP_CycHydrolase_dom 1318 1391
No external refs found!