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  5. SymbC1.scaffold1709.3

SymbC1.scaffold1709.3 (1709.3)


Aliases : 1709.3

Description : Hypothetical protein


Gene families : OG_01_0000169 (OrthoFinder) Phylogenetic Tree(s): OG0000169_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1709.3
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold110.2 110.2 Ribonuclease H domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold1613.2 1613.2 C-5 cytosine methyltransferase; Reverse transcriptase... 0.06 OrthoFinder
SymbC1.scaffold262.5 262.5 Ribonuclease H domain; Reverse transcriptase domain... 0.05 OrthoFinder
SymbC1.scaffold4890.1 4890.1 Reverse transcriptase domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold7591.2 7591.2 C-5 cytosine methyltransferase; Reverse transcriptase... 0.05 OrthoFinder
SymbC1.scaffold8956.2 8956.2 Reverse transcriptase domain [Interproscan]. 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
BP GO:0000270 peptidoglycan metabolic process IEP Enrichment
MF GO:0003796 lysozyme activity IEP Enrichment
MF GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity IEP Enrichment
MF GO:0004325 ferrochelatase activity IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006026 aminoglycan catabolic process IEP Enrichment
BP GO:0006027 glycosaminoglycan catabolic process IEP Enrichment
BP GO:0006783 heme biosynthetic process IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Enrichment
BP GO:0009253 peptidoglycan catabolic process IEP Enrichment
CC GO:0015627 type II protein secretion system complex IEP Enrichment
BP GO:0015628 protein secretion by the type II secretion system IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
BP GO:0016998 cell wall macromolecule catabolic process IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
BP GO:0030203 glycosaminoglycan metabolic process IEP Enrichment
MF GO:0031419 cobalamin binding IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0044036 cell wall macromolecule metabolic process IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
MF GO:0061783 peptidoglycan muralytic activity IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
BP GO:0071806 protein transmembrane transport IEP Enrichment
BP GO:0098776 protein transport across the cell outer membrane IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment

No InterPro domains available for this sequence

No external refs found!