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  5. SymbC1.scaffold1679.4

SymbC1.scaffold1679.4 (1679.4)


Aliases : 1679.4

Description : Thioredoxin domain [Interproscan].


Gene families : OG_01_0001763 (OrthoFinder) Phylogenetic Tree(s): OG0001763_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: SymbC1.scaffold1679.4
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cre02.g088200 30786096 Enzyme classification.EC_5 isomerases.EC_5.3... 0.01 OrthoFinder
Cz17g07120.t1 No alias Thioredoxin domain; Thioredoxin-like domain [Interproscan]. 0.03 OrthoFinder
Transcript_contig_55107 55107 Thioredoxin domain; Thioredoxin-like domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_59180 59180 Thioredoxin domain; Thioredoxin-like domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01003523.1_cds_GFH27557.1_22034 HaLaN_25898, GFH27557 Protein disulfide-isomerase 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59419.1_6943 PRW59419 Disulfide isomerase-like 1-2 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495733.1_1731 KAA8495733 Protein disulfide isomerase-like 1-3 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 216 318
No external refs found!