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  5. SymbC1.scaffold16.229

SymbC1.scaffold16.229 (16.229)


Aliases : 16.229

Description : PDZ domain; Glycosyl hydrolase family 98, putative carbohydrate-binding module; Trypsin-like peptidase domain [Interproscan].


Gene families : OG_01_0013550 (OrthoFinder) Phylogenetic Tree(s): OG0013550_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold16.229
Cluster HCCA: Cluster_194

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold2.2120 2.2120 PDZ domain; Trypsin-like peptidase domain [Interproscan]. 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013222 Glyco_hyd_98_carb-bd 635 733
IPR001478 PDZ 985 1065
No external refs found!