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  5. SymbC1.scaffold16.178

SymbC1.scaffold16.178 (16.178)


Aliases : 16.178

Description : RTX calcium-binding nonapeptide repeat; RHS repeat [Interproscan].


Gene families : OG_01_0005046 (OrthoFinder) Phylogenetic Tree(s): OG0005046_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold16.178
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.2155 1.2155 RHS repeat; Bacterial Ig domain; RTX calcium-binding... 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
InterPro domains Description Start Stop
IPR031325 RHS_repeat 2956 2989
IPR031325 RHS_repeat 2977 3009
IPR031325 RHS_repeat 3019 3047
IPR031325 RHS_repeat 2849 2886
IPR031325 RHS_repeat 2799 2833
IPR031325 RHS_repeat 2891 2925
IPR001343 Hemolysn_Ca-bd 1532 1566
No external refs found!