SymbC1.scaffold1583.1 (1583.1)

Aliases : 1583.1

Description : ABC transporter-like; Chromo domain; ABC-transporter extension domain [Interproscan].

Gene families : OG_01_0000132 (OrthoFinder) Phylogenetic Tree(s): OG0000132_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold1583.1
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cz19g00150.t1	No alias	ABC-transporter extension domain; ABC transporter-like...	0.01	OrthoFinder
Sro365_g127370.1	Contig3612.g27911	Tylosin resistance ATP-binding protein TlrC	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000030	mannosyltransferase activity	IEP	Enrichment
MF	GO:0004089	carbonate dehydratase activity	IEP	Enrichment
MF	GO:0004363	glutathione synthase activity	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
BP	GO:0006486	protein glycosylation	IEP	Enrichment
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Enrichment
BP	GO:0006749	glutathione metabolic process	IEP	Enrichment
BP	GO:0006750	glutathione biosynthetic process	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
MF	GO:0016881	acid-amino acid ligase activity	IEP	Enrichment
BP	GO:0019184	nonribosomal peptide biosynthetic process	IEP	Enrichment
CC	GO:0030014	CCR4-NOT complex	IEP	Enrichment
CC	GO:0030684	preribosome	IEP	Enrichment
CC	GO:0032040	small-subunit processome	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Enrichment
BP	GO:0043413	macromolecule glycosylation	IEP	Enrichment
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Enrichment
BP	GO:0070085	glycosylation	IEP	Enrichment
CC	GO:0140535	intracellular protein-containing complex	IEP	Enrichment
CC	GO:1990904	ribonucleoprotein complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	484	643
IPR032781	ABC_tran_Xtn	684	758
IPR003439	ABC_transporter-like_ATP-bd	116	353
IPR003439	ABC_transporter-like_ATP-bd	806	930
IPR023780	Chromo_domain	235	272

External Links

No external refs found!