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  5. SymbC1.scaffold1582.1

SymbC1.scaffold1582.1 (1582.1)


Aliases : 1582.1

Description : RNA recognition motif domain; RAP domain [Interproscan].


Gene families : OG_01_0000025 (OrthoFinder) Phylogenetic Tree(s): OG0000025_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1582.1
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_54155 54155 RAP domain [Interproscan]. 0.01 OrthoFinder
Vocar.0020s0010.1 32886796 RAP domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01003161.1_cds_GFH26543.1_21020 HaLaN_24711, GFH26543 RAP domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39331.1_2626 PRW39331 Tbc2 translation chloroplastic 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR013584 RAP 873 919
IPR000504 RRM_dom 1244 1275
No external refs found!