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  5. SymbC1.scaffold1576.4

SymbC1.scaffold1576.4 (1576.4)


Aliases : 1576.4

Description : Cold-shock protein, DNA-binding; RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000183 (OrthoFinder) Phylogenetic Tree(s): OG0000183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1576.4
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000169.17 tig00000169_g11886.t1 External stimuli response.temperature.Csd... 0.01 OrthoFinder
Cre06.g268600 30779749, NAB1 External stimuli response.temperature.Csd... 0.03 OrthoFinder
Cz05g02010.t1 No alias Cold-shock protein, DNA-binding; RNA recognition motif... 0.02 OrthoFinder
EOD22827 No alias Cold-shock protein, DNA-binding [Interproscan]. 0.02 OrthoFinder
Sro1732_g294180.1 Contig1542.g14002 Lin-28 homolog A 0.02 OrthoFinder
SymbC1.scaffold21.326 21.326 Cold-shock protein, DNA-binding; Putative sensory... 0.02 OrthoFinder
Transcript_contig_62087 62087 Sphingomyelin synthase-like domain [Interproscan]. 0.01 OrthoFinder
XM_003064085.1 MicpuC2_53785, 53785 Highly cold-shock DNA binding protein 0.02 OrthoFinder
lcl|BLLF01001239.1_cds_GFH18032.1_12509 HaLaN_14767, GFH18032 CSD-domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496404.1_133 KAA8496404 Cold shock domain-containing protein 4 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0004497 monooxygenase activity IEP Enrichment
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Enrichment
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 341 403
IPR002059 CSP_DNA-bd 177 235
IPR002059 CSP_DNA-bd 9 67
IPR002059 CSP_DNA-bd 94 156
No external refs found!