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Aliases : 1555.1
Description : Zinc finger, CCHC-type [Interproscan].
Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: SymbC1.scaffold1555.1 | |
| Cluster | HCCA: Cluster_7 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| SymbC1.scaffold10380.1 | 10380.1 | Integrase, catalytic core [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold1152.4 | 1152.4 | Hypothetical protein | 0.1 | OrthoFinder | |
| SymbC1.scaffold12679.1 | 12679.1 | Zinc finger, CCHC-type [Interproscan]. | 0.03 | OrthoFinder | |
| SymbC1.scaffold12679.2 | 12679.2 | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.06 | OrthoFinder | |
| SymbC1.scaffold1307.2 | 1307.2 | Carbonic anhydrase; Integrase, catalytic core [Interproscan]. | 0.02 | OrthoFinder | |
| SymbC1.scaffold166.9 | 166.9 | Zinc finger, CCHC-type [Interproscan]. | 0.05 | OrthoFinder | |
| SymbC1.scaffold1771.4 | 1771.4 | Zinc finger, CCHC-type [Interproscan]. | 0.05 | OrthoFinder | |
| SymbC1.scaffold1790.1 | 1790.1 | Hypothetical protein | 0.06 | OrthoFinder | |
| SymbC1.scaffold1947.9 | 1947.9 | Hypothetical protein | 0.05 | OrthoFinder | |
| SymbC1.scaffold2028.3 | 2028.3 | Integrase, catalytic core [Interproscan]. | 0.1 | OrthoFinder | |
| SymbC1.scaffold2297.4 | 2297.4 | Hypothetical protein | 0.02 | OrthoFinder | |
| SymbC1.scaffold2374.4 | 2374.4 | Hypothetical protein | 0.05 | OrthoFinder | |
| SymbC1.scaffold277.5 | 277.5 | Zinc finger, CCHC-type [Interproscan]. | 0.03 | OrthoFinder | |
| SymbC1.scaffold329.2 | 329.2 | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.04 | OrthoFinder | |
| SymbC1.scaffold3297.5 | 3297.5 | Zinc finger, CCHC-type [Interproscan]. | 0.1 | OrthoFinder | |
| SymbC1.scaffold3641.3 | 3641.3 | Hypothetical protein | 0.03 | OrthoFinder | |
| SymbC1.scaffold3876.2 | 3876.2 | Zinc finger, CCHC-type [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold4098.6 | 4098.6 | Zinc finger, CCHC-type [Interproscan]. | 0.05 | OrthoFinder | |
| SymbC1.scaffold4165.2 | 4165.2 | Zinc finger, CCHC-type [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold5249.3 | 5249.3 | Zinc finger, CCHC-type [Interproscan]. | 0.03 | OrthoFinder | |
| SymbC1.scaffold550.3 | 550.3 | Zinc finger, CCHC-type [Interproscan]. | 0.03 | OrthoFinder | |
| SymbC1.scaffold5583.1 | 5583.1 | Hypothetical protein | 0.06 | OrthoFinder | |
| SymbC1.scaffold6253.2 | 6253.2 | Zinc finger, CCHC-type [Interproscan]. | 0.05 | OrthoFinder | |
| SymbC1.scaffold6954.1 | 6954.1 | Hypothetical protein | 0.09 | OrthoFinder | |
| SymbC1.scaffold7099.2 | 7099.2 | Hypothetical protein | 0.03 | OrthoFinder | |
| SymbC1.scaffold7159.1 | 7159.1 | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.06 | OrthoFinder | |
| SymbC1.scaffold720.6 | 720.6 | Zinc finger, CCHC-type [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold721.4 | 721.4 | Hypothetical protein | 0.09 | OrthoFinder | |
| SymbC1.scaffold7411.1 | 7411.1 | Hypothetical protein | 0.03 | OrthoFinder | |
| SymbC1.scaffold7569.1 | 7569.1 | Reverse transcriptase, RNA-dependent DNA polymerase;... | 0.03 | OrthoFinder | |
| SymbC1.scaffold7700.2 | 7700.2 | Hypothetical protein | 0.03 | OrthoFinder | |
| SymbC1.scaffold8751.1 | 8751.1 | Hypothetical protein | 0.04 | OrthoFinder | |
| SymbC1.scaffold8765.4 | 8765.4 | Hypothetical protein | 0.08 | OrthoFinder | |
| SymbC1.scaffold9481.1 | 9481.1 | Hypothetical protein | 0.05 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003919 | FMN adenylyltransferase activity | IEP | Enrichment |
| MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | Enrichment |
| MF | GO:0005539 | glycosaminoglycan binding | IEP | Enrichment |
| MF | GO:0008531 | riboflavin kinase activity | IEP | Enrichment |
| MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Enrichment |
| MF | GO:0009002 | serine-type D-Ala-D-Ala carboxypeptidase activity | IEP | Enrichment |
| MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| MF | GO:0042834 | peptidoglycan binding | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| MF | GO:0070566 | adenylyltransferase activity | IEP | Enrichment |
| BP | GO:0071586 | CAAX-box protein processing | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001878 | Znf_CCHC | 333 | 348 |
| No external refs found! |