SymbC1.scaffold15.288 (15.288)


Aliases : 15.288

Description : ParB/Spo0J, HTH domain; RNA polymerase sigma-70 region 2; Membrane insertase YidC/ALB3/OXA1/COX18; Jag, N-terminal; ParB/Sulfiredoxin; AAA domain; RNA polymerase sigma factor 70, region 4 type 2; rRNA small subunit methyltransferase G [Interproscan].


Gene families : OG_01_0003915 (OrthoFinder) Phylogenetic Tree(s): OG0003915_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold15.288
Cluster HCCA: Cluster_90


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008649 rRNA methyltransferase activity IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
MF GO:0032977 membrane insertase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Enrichment
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
CC GO:1904949 ATPase complex IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 1764 1827
IPR032782 Jag_N 355 397
IPR025669 AAA_dom 822 996
IPR041468 HTH_ParB/Spo0J 1205 1253
IPR001708 YidC/ALB3/OXA1/COX18 19 258
IPR003115 ParB/Sulfiredoxin_dom 1066 1152
IPR013249 RNA_pol_sigma70_r4_t2 1854 1905
IPR003682 rRNA_ssu_MeTfrase_G 665 765
No external refs found!