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  5. SymbC1.scaffold14937.1

SymbC1.scaffold14937.1 (14937.1)


Aliases : 14937.1

Description : DDE superfamily endonuclease domain; HTH CenpB-type DNA-binding domain [Interproscan].


Gene families : OG_01_0005067 (OrthoFinder) Phylogenetic Tree(s): OG0005067_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold14937.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold3867.3 3867.3 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold5876.1 5876.1 DDE superfamily endonuclease domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold6211.1 6211.1 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold7723.1 7723.1 DDE superfamily endonuclease domain [Interproscan]. 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
CC GO:0009427 bacterial-type flagellum basal body, distal rod, L ring IEP Enrichment
CC GO:0009428 bacterial-type flagellum basal body, distal rod, P ring IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
CC GO:0030288 outer membrane-bounded periplasmic space IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
InterPro domains Description Start Stop
IPR004875 DDE_SF_endonuclease_dom 333 432
IPR006600 HTH_CenpB_DNA-bd_dom 134 201
No external refs found!