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  5. Cpa|evm.model.tig00020510.21

Cpa|evm.model.tig00020510.21 (tig00000889_g5288.t1)


Aliases : tig00000889_g5288.t1

Description : Protein TIC 55, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000145 (OrthoFinder) Phylogenetic Tree(s): OG0000145_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020510.21
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000681.19 tig00000492_g1457.t1 Protein TIC 55, chloroplastic OS=Pisum sativum 0.04 OrthoFinder
Transcript_contig_89322 89322 Rieske [2Fe-2S] iron-sulphur domain; Pheophorbide a... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEA Interproscan
MF GO:0051537 2 iron, 2 sulfur cluster binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
InterPro domains Description Start Stop
IPR017941 Rieske_2Fe-2S 132 156
IPR013626 PaO 302 342
No external refs found!