SymbC1.scaffold1465.1 (1465.1)

Aliases : 1465.1

Description : DEAD/DEAH box helicase domain; DNA2/NAM7 helicase-like, AAA domain; ATP-dependent RNA helicase Ski2, C-terminal; Helicase, C-terminal; DNA2/NAM7 helicase, AAA domain [Interproscan].

Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold1465.1
Cluster	HCCA: Cluster_151

Target	Alias	Description	ECC score	Gene Family Method	Actions
Dusal.0632s00002.1	33192374	ATP-dependent RNA helicase Ski2, C-terminal;...	0.01	OrthoFinder
Dusal.0632s00003.1	33192367	Helicase, C-terminal; DEAD/DEAH box helicase domain;...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	Enrichment
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0004181	metallocarboxypeptidase activity	IEP	Enrichment
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
MF	GO:0008235	metalloexopeptidase activity	IEP	Enrichment
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Enrichment
BP	GO:0015693	magnesium ion transport	IEP	Enrichment
MF	GO:0016763	pentosyltransferase activity	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	81	230
IPR001650	Helicase_C	375	465
IPR012961	Ski2_C	566	736
IPR041679	DNA2/NAM7-like_C	1874	2077
IPR041677	DNA2/NAM7_AAA_11	1759	1866
IPR041677	DNA2/NAM7_AAA_11	1326	1497

External Links

No external refs found!

SymbC1.scaffold1465.1 (1465.1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation