SymbC1.scaffold1456.3 (1456.3)


Aliases : 1456.3

Description : Polycystin cation channel, PKD1/PKD2; Pseudouridine synthase, RsuA/RluA; Pentatricopeptide repeat [Interproscan].


Gene families : OG_01_0009953 (OrthoFinder) Phylogenetic Tree(s): OG0009953_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1456.3
Cluster HCCA: Cluster_63


Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
MF GO:0004620 phospholipase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR013122 PKD1_2_channel 78 518
IPR006145 PsdUridine_synth_RsuA/RluA 1436 1570
IPR002885 Pentatricopeptide_repeat 801 859
IPR002885 Pentatricopeptide_repeat 941 999
IPR002885 Pentatricopeptide_repeat 1125 1149
IPR002885 Pentatricopeptide_repeat 886 911
No external refs found!